VSEARCH¶
Description¶
VSEARCH supports de novo and reference based chimera detection, clustering, full-length and prefix dereplication, rereplication, reverse complementation, masking, all-vs-all pairwise global alignment, exact and global alignment searching, shuffling, subsampling and sorting. It also supports FASTQ file analysis, filtering, conversion and merging of paired-end reads.
More information¶
- Homepage: https://github.com/torognes/vsearch
Availability¶
| Module | NIC5 | Hercules2 | Dragon2 | Lemaitre3 | Dragon1 |
|---|---|---|---|---|---|
| VSEARCH/2.15.0-GCC-9.3.0 | ✓ | ||||
| VSEARCH/2.18.0-GCC-10.2.0 | ✓ | ||||
| VSEARCH/2.18.0-GCC-10.3.0 | ✓ | ||||
| VSEARCH/2.22.1-GCC-11.3.0 | ✓ | ||||
| VSEARCH/2.27.0-GCC-12.2.0 | ✓ | ||||
| VSEARCH/2.9.1-foss-2018b | ✓ | ||||
| VSEARCH/2.9.1-foss-2019b | ✓ |