TEtranscripts

Description

TEtranscripts and TEcount takes RNA-seq (and similar data) and annotates reads to both genes & transposable elements. TEtranscripts then performs differential analysis using DESeq2.

More information

• Homepage: https://github.com/mhammell-laboratory/TEtranscripts

Compatible modules

This module is compatible with the following modules, one of each line is required: * Python/3.8.2-GCCcore-9.3.0 (default), Python/2.7.18-GCCcore-9.3.0

Included extensions

argparse-1.4.0, TEtranscripts-2.2.0

Availability

Module	NIC5	Hercules2	Dragon2	Lemaitre3	Dragon1
TEtranscripts/2.2.0-foss-2020a	✓