pySCENIC

Description

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

More information

• Homepage: https://github.com/aertslab/pySCENIC

Included extensions

arboreto-0.1.5, boltons-20.2.0, cytoolz-0.10.1, dill-0.3.2, frozendict-1.2, interlap-0.2.6, loompy-3.0.6, multiprocessing_on_dill-3.5.0a4, numpy_groupies-0.9.10, pyscenic-0.10.3, umap-learn-0.4.6

Availability

Module	NIC5	Hercules2	Dragon2	Lemaitre3	Dragon1
pySCENIC/0.10.3-foss-2020a-Python-3.8.2		✓