manta

Description

Manta calls structural variants (SVs) and indels from mapped paired-end sequencing reads. It is optimized for analysis of germline variation in small sets of individuals and somatic variation in tumor/normal sample pairs. Manta discovers, assembles and scores large-scale SVs, medium-sized indels and large insertions within a single efficient workflow.

More information

• Homepage: https://github.com/Illumina/manta

Availability

Module	NIC5	Hercules2	Dragon2	Lemaitre3	Dragon1
manta/1.6.0-GCC-10.2.0-Python-2.7.18				✓