Docs

Quick start – First steps

  • Creating an account
  • Connecting to the clusters
  • Introduction to Linux
  • Copying files
  • Editing files
  • Submitting jobs with Slurm
  • Glossary
  • Acknowledging the CÉCI

Managing files

  • Disk space
  • Transferring files to and from the clusters
  • Using the common filesystem
  • Sharing files among CÉCI users
  • Copy files and folders to the /CECI/proj partition
  • Making your files Secure
  • Making your files safe
  • Long term data storage
  • Encrypting files

Using software and libraries

  • Using pre-installed software
  • Software installed in the clusters
  • Compiling and installing software from source
  • Installing software by yourself
  • Singularity Container
  • Visualization server
  • Jupyter
  • Login shell

Submitting jobs to the cluster

  • Submitting jobs with Slurm
  • Slurm F.A.Q
  • Slurm priorities
  • A job submission helper on Hercules: ssubmit
  • Getting Job Efficiency
  • Slurm limits
  • Workflow management
  • Slurm interactive jobs

Software-specific documentation

  • Matlab
  • R
  • Python
CÉCI
  • Docs »
  • Welcome to the CECI documentation!

Welcome to the CECI documentation!¶

All technical specificities of the CECI clusters are described over there . Here, you will find all technical information needed to run jobs on them.

Quick start – First steps¶

  • Creating an account
  • Connecting to the clusters
  • Introduction to Linux
  • Copying files
  • Editing files
  • Submitting jobs with Slurm
  • Glossary
  • Acknowledging the CÉCI

Managing files¶

  • Disk space
  • Transferring files to and from the clusters
  • Using the common filesystem
  • Sharing files among CÉCI users
  • Copy files and folders to the /CECI/proj partition
  • Making your files Secure
  • Making your files safe
  • Long term data storage
  • Encrypting files

Using software and libraries¶

  • Using pre-installed software
  • Software installed in the clusters
  • Compiling and installing software from source
  • Installing software by yourself
  • Singularity Container
  • Visualization server
  • Jupyter
  • Login shell

Submitting jobs to the cluster¶

  • Submitting jobs with Slurm
  • Slurm F.A.Q
  • Slurm priorities
  • A job submission helper on Hercules: ssubmit
  • Getting Job Efficiency
  • Slurm limits
  • Workflow management
  • Slurm interactive jobs

Software-specific documentation¶

  • Matlab
  • R
    • Installing a R package on the clusters
  • Python
    • Scientific Python and the SciPy-bundle
    • Extension-only modules
    • User-installed packages
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